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NeuriteTracer: a novel ImageJ plugin for automated ...

    https://pubmed.ncbi.nlm.nih.gov/17936365/
    Abstract. In vitro assays to measure neuronal growth are a fundamental tool used by many neurobiologists studying neuronal development and regeneration. The quantification of these assays requires accurate measurements of neurite length and neuronal cell numbers in neuronal cultures. Generally, these measurements are obtained through labor-intensive manual or semi …

Frontiers | Automated Neuron Tracing Using Content …

    https://www.frontiersin.org/articles/10.3389/fnana.2021.712842/full
    Neuron tracing, as the essential step for neural circuit building and brain information flow analyzing, plays an important role in the understanding of brain organization and function. Though lots of methods have been proposed, automatic and accurate neuron tracing from optical images remains challenging.

Optimization of Neurite Tracing and Further ...

    https://pubmed.ncbi.nlm.nih.gov/34827371/
    Surprisingly, it was one of the semi-automated methods that was the fastest, consisting of tracing only the longest primary and the longest secondary neurite. This tracing technique also detected more structural deficits. The only automated method tested, Volocity, detected MDNCs but failed to trace the entire neuritic length.

Automatic Robust Neurite Detection and Morphological ...

    https://littletonlab.mit.edu/wp-content/uploads/2022/02/2010-Wu-et-al-Automated-Tracing.pdf
    reasons. Meijering et al. (2004) developed a semi-automatic searching-based algorithm for tracing neurites, which requires users to manually identify neurite start and end points. In this method, neurites are extracted by optimizing an energy function based on second-order directional derivatives. Although this method works well for noisy

NeuriteTracer: A novel ImageJ plugin for automated ...

    https://www.moleculardevices.com/resources/citations/neuritetracer-a-novel-image-plugin-for-automated-quantification-of-neurite-outgrowth
    In vitro assays to measure neuronal growth are a fundamental tool used by many neurobiologists studying neuronal development and regeneration. The quantification of these assays requires accurate measurements of neurite length and neuronal cell numbers in neuronal cultures. Generally, these measurements are obtained through labor-intensive manual or semi …

Automated Neurite Extraction Using Dynamic …

    https://www.ncbi.nlm.nih.gov/sites/ppmc/articles/PMC2000820/
    High throughput screening (HTS) of cell-based assays has recently emerged as an important tool of drug discovery. The analysis and modeling of HTS microscopy neuron images, however, is particularly challenging. In this paper we present a novel algorithm ...

NeuriteTracer: an ImageJ plugin for automated tracing of ...

    https://fournierlab.mcgill.ca/styled-6/NeuriteTracer.html
    NeuriteTracer: an ImageJ plugin for automated tracing of neurites In vitro assays to measure neuronal growth are a fundamental tool used by many neurobiologists studying neuronal development and regeneration. The quantification of these assays requires accurate measurements of neurite length and neuronal cell numbers in neuronal cultures.

Fast Neurite Tracer download | SourceForge.net

    https://sourceforge.net/projects/fast-neurite-tracer/
    Fast Neurite Tracer (FNT) is a tool for semi-automated neurite tracing. FNT can handle big imaging data such as fMOST data. It can also process other types of light imaging data in general. FNT is designed to be * accurate in tracing …

Design and validation of a tool for neurite tracing and ...

    https://onlinelibrary.wiley.com/doi/10.1002/cyto.a.20022
    Neurite tracing using our technique consists of a detection phase, in which every individual pixel in the image is assigned a value indicating its likelihood of belonging to a neurite; and the actual tracing phase, in which consecutive pixels that are most likely to represent the centerlines of the neurites are linked together to constitute the tracings. The former is a …

Design and Validation of a Tool for Neurite Tracing and ...

    https://user.engineering.uiowa.edu/~jcb/Papers/cyto2004.pdf
    Tracing Technique Neurite tracing using our technique consists of (i) a detection phase, in which every individual pixel in the image is assigned a value indicating its likelihood of belonging to a neurite, and (ii) the actual tracing phase, in which consecutive pixels that are most likely to represent the centerlines of the neurites

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