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Optimization of Neurite Tracing and Further ...
https://pubmed.ncbi.nlm.nih.gov/34827371/
Simple Neurite Tracer - ImageJ
https://imagej.net/plugins/simple-neurite-tracer/
The Simple Neurite Tracer plugin was designed to allow easy semi-automatic tracing of neurons or other tube-like structures (e.g. blood vessels) through 3D image stacks. It has been replaced by the much more sophisticated SNT plugin.
Neurite Tracing With Object Process - PubMed
https://pubmed.ncbi.nlm.nih.gov/26742129/
We capture a mathematical model abstracting out the relevant position, shape and connectivity information about neuronal branches from the microscopy data into connected minimum spanning trees. Such digital reconstruction is represented in standard SWC format, prevalent for archiving, sharing, and further analysis in the neuroimaging community. Our proposed pipeline …
NeuriteTracer: a novel ImageJ plugin for automated ...
https://pubmed.ncbi.nlm.nih.gov/17936365/
Abstract. In vitro assays to measure neuronal growth are a fundamental tool used by many neurobiologists studying neuronal development and regeneration. The quantification of these assays requires accurate measurements of neurite length and neuronal cell numbers in neuronal cultures. Generally, these measurements are obtained through labor-intensive manual or semi …
Design and Validation of a Tool for Neurite Tracing and ...
https://pubmed.ncbi.nlm.nih.gov/15057970/
Providing similar accuracy in measuring neurite length, significantly improved accuracy in neurite centerline extraction, and significantly improved reproducibility and reduced labor intensiveness, the developed technique may replace fully manual tracing methods.
Simple Neurite Tracer › Basic Instructions
https://imagej.net/plugins/simple-neurite-tracer/basic-instructions
Simple Neurite Tracer › Basic Instructions Starting the PlugIn. The three pane view gives you views of the image stack through XZ and ZY planes as well as the... Branching and Joining Paths. In this plugin each path can only be a linear succession of points in …
Simple Neurite Tracer: Step-By-Step Instructions - ImageJ
https://imagej.net/imagej-wiki-static/Simple_Neurite_Tracer:_Step-By-Step_Instructions
1 Step-by-Step Tracer Instructions. 1.1 Trace a basic path: 1.1.1 1. Pick a start point; 1.1.2 2. Click a subsequent point; 1.1.3 3. Confirm the temporary path; 1.1.4 4. After confirming the temporary path; 1.1.5 5. After completing a path; 1.2 Branching: Start a path on an existing path. 1.2.1 1. Select the path to branch off; 1.2.2 2. Click while holding the branch modifier to start the branch
NeuriteTracer: an ImageJ plugin for automated tracing of ...
http://fournierlab.mcgill.ca/styled-6/NeuriteTracer.html
NeuriteTracer: an ImageJ plugin for automated tracing of neurites In vitro assays to measure neuronal growth are a fundamental tool used by many neurobiologists studying neuronal development and regeneration. The quantification of these assays requires accurate measurements of neurite length and neuronal cell numbers in neuronal cultures.
Frontiers | Automated Neuron Tracing Using Content …
https://www.frontiersin.org/articles/10.3389/fnana.2021.712842/full
Neuron tracing, as the essential step for neural circuit building and brain information flow analyzing, plays an important role in the understanding of brain organization and function. Though lots of methods have been proposed, automatic and accurate neuron tracing from optical images remains challenging.
Tracing Neurons using FIJI (ImageJ) - The Snyder Lab
http://snyderlab.com/2016/05/25/tracing-neurons-using-fiji-imagej/
TRACING WITH FIJI’S SIMPLE NEURITE TRACER Familiarize yourself with the file. You can always see the x and y plane because it’s what you have on your 2D screen. What you are moving through when you scroll is the z plane (like a digital flipbook! Or I guess, videos with less impressive frames/sec).
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