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[PyMOL] pymol crashes with large pdb files
https://pymol-users.narkive.com/kkwK6NGN/pymol-pymol-crashes-with-large-pdb-files#:~:text=When%20I%20ray-trace%20large%20pdb%20files%20%28proteasome%3B%201pma%2C,1ryp%2C%201fnt%20straight%20off%20the%20pdb%29%2C%20pymol%20crashes.
[PyMOL] Ray Tracing Crash
https://pymol-users.narkive.com/ffa1qOdj/pymol-ray-tracing-crash
[PyMOL] Ray Tracing Crash Morri Feldman 18 years ago I am running pymol .93. When I try to ray trace a scene, the gui shows a white status bar that moves halfway across the screen and then freezes. After this the GUI is frozen and must be killed. No error messages are shown. The computer is running RedHat 9 and has 4 processors. Has
PyMOL Molecular Graphics System / Re: [PyMOL] Ray …
https://sourceforge.net/p/pymol/mailman/message/7562406/
PyMOL is an OpenGL based molecular visualization system Brought to you by: herc111 ...
PyMOL Molecular Graphics System / RE: [PyMOL] Ray …
https://sourceforge.net/p/pymol/mailman/message/7562389/
PyMOL Molecular Graphics System. Mailing Lists. PyMOL Molecular Graphics System PyMOL is an OpenGL based molecular visualization system Brought to you by: herc111, jarrettj ...
[PyMOL] pymol crashes with large pdb files
https://pymol-users.narkive.com/kkwK6NGN/pymol-pymol-crashes-with-large-pdb-files
I'm running pymol 0.89 on quite capable machines. When I ray-trace large pdb files (proteasome; 1pma, 1ryp, 1fnt straight off the pdb), pymol crashes. Doesn't matter if surface or cartoon representation. When I decrease the number of subunits from 28 (or 42 in case of 1fnt) to less than 20 (cut-open or end-on view), ray-tracing works fine.
Ray Tracing - PyMOLWiki
https://pymolwiki.org/index.php/Ray_Tracing
Adjusting ray trace-image size. Much, much more at Ray . The pymol ray tracer can generate an image of any size. ray height,width. Example: ray 3000,2400 png filename.png.
Ray - PyMOLWiki
https://pymolwiki.org/index.php/Ray
Settings Modes. Setting the Ray_trace_mode variable in PyMOL changes the way PyMOL's internal renderer represents proteins in the final output. New modes were recently added to give the user more options of molecular representation. New modes are: normal rendering, but with a black outline (nice for presentations); black and white only; quantized color with black …
Ray_tracing a tetramer Electrostatic map in PyMol : PyMOL
https://www.reddit.com/r/PyMOL/comments/ukd8wz/ray_tracing_a_tetramer_electrostatic_map_in_pymol/
Ray_tracing a tetramer Electrostatic map in PyMol. I am trying to Ray an electrostatic map of A tetramer, somehow this takes forever on 32 gigs machine and crashes on 8 gigs machine. I have got a bunch of others that should also be Ray traced the same way, so i was wondering why this is happening and if there are any alternatives. I first tried Ray 4000 and then downgraded the …
Pymol: HighResolution Raytracing on large Protein ... - Scientist …
https://www.scientistsolutions.com/forum/bioinformatics-miscellaneous-software/pymol-highresolution-raytracing-large-protein-complexes/
Sometimes the available RAM drops to 5 MB, mostly it is about 20. This is also the case when I am rendering for instance the protein complex as sticks, which does not lead to a crash. When I render the complex as surface model, Pymol crashes IMMEDIATELY, I can't discover a complete RAM blockade in the task manager.
troubleshooting:performance [PyMOL Documentation]
http://pymol.org/dokuwiki/doku.php?id=troubleshooting:performance
As for ray-tracing million atom systems, ... PyMOL’s best case memory usage is 16 bytes per 3D atomic coordinate, which works out to 1,000 frames of a 50,000 atom molecular dynamics trajectory per GB of available RAM (or 10,000 frames of a 5,000 atom trajectory per GB). Actual RAM usage will be worse than that, depending upon what ...
Ray Tracing - PyMOL Wiki
https://wiki.pymol.org/index.php/Ray_Tracing
Ray Tracing. From PyMOL Wiki. Jump to navigation Jump to search. Adjusting ray trace-image size. Much, much more at Ray. The pymol ray tracer can generate an image of any size. ray height, width. Example: ray 3000, 2400 png filename. png. Ray tracing maps. For better quality maps with a white background.
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