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Automatic 3D neuron tracing using all-path pruning - OUP …
https://academic.oup.com/bioinformatics/article-abstract/27/13/i239/181573
Motivation: Digital reconstruction, or tracing, of 3D neuron structures is critical toward reverse engineering the wiring and functions of a brain. However, despite a number of existing studies, this task is still challenging, especially when a 3D microscopic image has low signal-to-noise ratio (SNR) and fragmented neuron segments.
Automatic 3D neuron tracing using all-path pruning
https://pubmed.ncbi.nlm.nih.gov/21685076/
Abstract Motivation: Digital reconstruction, or tracing, of 3D neuron structures is critical toward reverse engineering the wiring and functions of a brain. However, despite a number of existing studies, this task is still challenging, especially when a 3D microscopic image has low signal-to-noise ratio (SNR) and fragmented neuron segments.
v3d_external/neuron_tracing.h at master · …
https://github.com/Vaa3D/v3d_external/blob/master/v3d_main/neuron_tracing/neuron_tracing.h
www.vaa3d.org : download the latest Binary version here https://github.com/Vaa3D/release/releases/tag/v3.200 - v3d_external/neuron_tracing.h at master · …
Automatic 3D neuron tracing using all-path pruning
https://www.ncbi.nlm.nih.gov/sites/ppmc/articles/PMC3117353/
Motivation:Digital reconstruction, or tracing, of 3D neuron structures is critical toward reverse engineering the wiring and functions of a brain. However, despite a number of existing studies, this task is still challenging, especially when a 3D microscopic image has low signal-to-noise ratio (SNR) and fragmented neuron segments.
Automated 3-D Neuron Tracing With Precise Branch …
https://pubmed.ncbi.nlm.nih.gov/29993997/
In this paper, we developed a new algorithm for automatic 3-D neuron reconstruction. The main idea of the proposed algorithm is to iteratively track backward from the potential neuronal termini to the soma centre. An online confidence score is computed to decide if a tracing iteration should be stopped and discarded from the final reconstruction.
Neuron Tracing | MBF Bioscience
https://www.mbfbioscience.com/neuron-tracing
Neuron tracing is the process of creating digital reconstructions of the entire (or sometimes only specific portions) of neurons. Neuron tracing includes delineating and reconstructing the axon, dendrites soma, and other sub-cellular components of a neuron, thereby creating a digital, geometric model of the neuron.
(PDF) Automatic 3D neuron tracing using all-path pruning
https://www.researchgate.net/publication/51230551_Automatic_3D_neuron_tracing_using_all-path_pruning
Digital reconstruction, or tracing, of 3D neuron structures is critical toward reverse engineering the wiring and functions of a brain. However, despite a number of existing studies, this task is...
(PDF) Tree2Tree2: Neuron tracing in 3D - ResearchGate
https://www.researchgate.net/publication/261482651_Tree2Tree2_Neuron_tracing_in_3D
The adaptive method successfully identifies the neuronal segment. Comparative results: The first column from left shows the MIP images of some neurons …
V3D enables real-time 3D visualization and quantitative
https://www.nature.com/articles/nbt.1612
We developed V3D-Neuron to trace the 3D structure of a neuron or a neurite tract from images. V3D-Neuron also immediately displays the tracing results superimposed upon the raw image data, letting...
A Virtual Reality Visualization Tool for Neuron …
https://www.sci.utah.edu/publications/Ush2017c/vr-neuron-tracing-2.pdf
2.2 Neuron Tracing Workflow A typical neuron imaging and tracing workflow proceeds as follows. First, neurons and their processes are labeled using neuroanatomical tracing methods. Modern approaches to labeling neurons in large brains involve the use of viral vectors carrying the genes for fluorescent pro-teins [27].
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